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Installing HDF5

Procedure

  1. Use PuTTY to log in to the server as the root user.
  2. Run the following command to decompress the HDF5 installation package:
    tar -xvf hdf5-1.10.5.tar.gz
  3. Run the following command to switch to the directory generated after decompression:
    cd hdf5-1.10.5
  4. Run the following command to perform the configuration:
    ./configure --prefix=/path/to/HDF5 --enable-fortran --enable-parallel CC=mpicc FC=mpif90 CXX=mpicxx
  5. Run the following commands to perform compilation and installation:
    make -j
    make install
  6. Run the following commands to set the HDF5 environment variables:
    export LD_LIBRARY_PATH=/path/to/HDF5/lib:$LD_LIBRARY_PATH
    export HDF5=/path/to/HDF5