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Paths for Software Porting

This chapter lists the software installation paths involved in the HISAT2 software porting.

Table 1 Paths for software porting

No.

Software Installation Path

Description

Remarks

1

-

Installation path of each software package for setting up the basic environment

See "Paths for Software Porting" in Basic Environment Setup Guide.

2

/path/to/HISAT2

Installation path of HISAT2

The installation paths provided here are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.

3

/path/to/CASE

Planned path for storing the test cases of HISAT2