Paths for Software Porting

This chapter lists the software installation paths involved in the HISAT2 software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package for setting up the basic environment	See "Paths for Software Porting" in Basic Environment Setup Guide.
2	/path/to/HISAT2	Installation path of HISAT2	The installation paths provided here are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/CASE	Planned path for storing the test cases of HISAT2

Parent topic: HISAT2 2.1.0 Porting Guide (CentOS 7.6)