Paths for Software Porting

This chapter lists the software installation paths involved in the Trinity software porting.

**Table 1** Paths for software porting
No.	Software Installation Path	Description	Remarks
1	-	Installation path of each software package required for setting up the basic environment.	See "Paths for Software Porting" in Basic Environment Setup Guide.
2	/path/to/SALMON	Installation path of Salmon.	The installation paths provided here are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.
3	/path/to/JELLYFISH	Installation path of Jellyfish.
4	/path/to/BOWTIE2	Installation path of Bowtie 2.
5	/path/to/HTSLIB	Installation path of HTSlib.
6	/path/to/SAMTOOLS	Installation path of Samtools.
7	/path/to/PYTHON	Installation path of Python.
8	/path/to/BOOST	Installation path of Boost.
9	/path/to/TRINITY	Installation path of Trinity.
10	/path/to/CMAKE	Installation path of CMake.
11	/path/to/CASE	Path for storing test cases.

Parent topic: Trinity 2.11.0 Porting Guide (CentOS 7.6)