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Paths for Software Porting

This chapter lists the software installation paths involved in the Trinity software porting.

Table 1 Paths for software porting

No.

Software Installation Path

Description

Remarks

1

-

Installation path of each software package required for setting up the basic environment.

See "Paths for Software Porting" in Basic Environment Setup Guide.

2

/path/to/SALMON

Installation path of Salmon.

The installation paths provided here are only examples. Shared paths are recommended. Replace the paths used in commands in this document with the actual paths planned during the installation process.

3

/path/to/JELLYFISH

Installation path of Jellyfish.

4

/path/to/BOWTIE2

Installation path of Bowtie 2.

5

/path/to/HTSLIB

Installation path of HTSlib.

6

/path/to/SAMTOOLS

Installation path of Samtools.

7

/path/to/PYTHON

Installation path of Python.

8

/path/to/BOOST

Installation path of Boost.

9

/path/to/TRINITY

Installation path of Trinity.

10

/path/to/CMAKE

Installation path of CMake.

11

/path/to/CASE

Path for storing test cases.