Compilation and Installation

Procedure

1. Use PuTTY to log in to the server as the root user.
2. Go to the Python virtual environment.

   cd /path/to/athena_meta/
   python -m pip install virtualenv

   python -m virtualenv .env

   source .env/bin/activate

3. Add the environment variable.

   vi ~/.bashrc

   Add the following content to the opened file:

   export ATHENA_HOME=/path/to/athena_meta/dependences
   export PATH=$ATHENA_HOME/idba-1.1.3a1/bin:$PATH
   export PATH=$ATHENA_HOME/samtools-1.16.1/bin:$PATH
   export PATH=$ATHENA_HOME/htslib-1.16/bin:$PATH
   export PATH=$ATHENA_HOME/minimap2:$PATH
   export PATH=$ATHENA_HOME/bwa-0.7.17:$PATH
   export PATH=$ATHENA_HOME/flye-2.31/bin:$PATH

   Press Esc, type :wq!, and press Enter to save the file and exit.

4. Make the modification to take effect.

   source ~/.bashrc

5. Perform the compilation and installation.

   cd athena_meta

   pip install .