Introduction

Software Overview

SMARTdenovo is a de novo sequence assembler for PacBio or Oxford Nanopore. It is open source software written in the C language. Unlike other assemblers such as CANU and FALCON, SMARTdenovo produces an assembly from raw reads without an error correction stage. SMARTdenovo also provides tools to polish the assembled contigs to generate consensus. You can also use other consensus polish tools for higher accuracy.

This practice uses the Kunpeng Porting Advisor to port software source code to the Kunpeng platform. The process covers analysis, modification, compilation, rebuild, and verification. Refer to this practice to port other pieces of software.

Programming language: C

Open source license: GPL-3.0 License

Recommended Software Version

Kunpeng DevKit version: 26.0.RC1

SMARTdenovo source package: smartdenovo-master